PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast05G265600.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family NAC
Protein Properties Length: 254aa    MW: 27582.8 Da    PI: 9.0081
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast05G265600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM124.11.2e-38201561127
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkk...leleevikevdiykvePwdLpk...kvka...eekewyfFskrdkkya.tgkrknratksg 81 
                         ++pGfrF Pt+eel+ +yL++++++      +l++vi+ vd+y ++P+ Lp+   +  a   + ++w+fF++r+ + + +g r+ r+t sg
  Brast05G265600.1.p  20 MAPGFRFYPTEEELLGFYLRHRLAAAAatrPPLHRVIPVVDVYAHHPSALPSmagE--AsvrDAEQWFFFCPRAPERElRGGRPARTTPSG 108
                         579*******************98887666788889***************53442..13335669******98776648*********** PP

                 NAM  82 yWkatgkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyr 127
                         yWkatg+   v+s+  ++el+g+k+t+vfy+grap+g kt+W m+ey+
  Brast05G265600.1.p 109 YWKATGSPSYVFSSssSSELIGVKRTMVFYNGRAPTGAKTRWKMNEYK 156
                         ************98777888***************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.45E-4219185IPR003441NAC domain
PROSITE profilePS5100545.59520186IPR003441NAC domain
PfamPF023651.6E-2222156IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MATRTSSGRG EEEEEAASAM APGFRFYPTE EELLGFYLRH RLAAAAATRP PLHRVIPVVD  60
VYAHHPSALP SMAGEASVRD AEQWFFFCPR APERELRGGR PARTTPSGYW KATGSPSYVF  120
SSSSSSELIG VKRTMVFYNG RAPTGAKTRW KMNEYKALAH GGPSLQPTTA PPKLRNEFSV  180
CRVYVSTGTL RSFDRRPLNA AGHAQAQAAA YRHQSAPSAA AALDTNLAEN TRDFSSSMIA  240
AAASDDLDFD MDF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-2781845163NO APICAL MERISTEM PROTEIN
1ut4_B2e-2781845163NO APICAL MERISTEM PROTEIN
1ut7_A2e-2781845163NO APICAL MERISTEM PROTEIN
1ut7_B2e-2781845163NO APICAL MERISTEM PROTEIN
3swm_A2e-2781848166NAC domain-containing protein 19
3swm_B2e-2781848166NAC domain-containing protein 19
3swm_C2e-2781848166NAC domain-containing protein 19
3swm_D2e-2781848166NAC domain-containing protein 19
3swp_A2e-2781848166NAC domain-containing protein 19
3swp_B2e-2781848166NAC domain-containing protein 19
3swp_C2e-2781848166NAC domain-containing protein 19
3swp_D2e-2781848166NAC domain-containing protein 19
4dul_A2e-2781845163NAC domain-containing protein 19
4dul_B2e-2781845163NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003577031.11e-137PREDICTED: NAC domain-containing protein 90-like
SwissprotQ9FMR31e-68NAC90_ARATH; NAC domain-containing protein 90
TrEMBLA0A0Q3HFE81e-137A0A0Q3HFE8_BRADI; Uncharacterized protein
STRINGBRADI4G42180.11e-129(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP100538140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22380.12e-56NAC domain containing protein 90